SingleCellseq VIZ
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Cell frequency in each cluster per group
Number of UMIS/Cells in dataset
~~~Created by Mamta Giri from Mount Sinai~~~~
TSNE visualization of the combined model
Find Markers of a defined cluster
Please input values only for conserved marker analysis
ClusterToUse
Cluster2ToUse
GroupinVar
Make a choice :
All Cluster Marker
Conserved Cluster Marker
Find Markers
Show Markers
Perform differential expression between groups in specified cluster
add
ClusterToUseDEG
Cluster_1
Cluster_2
GroupingVar
Make a choice :
DEG group Marker
Conserved group Marker
Particular cluster group Marker
Find DEGs
Download Average Expression table
Display Doptplot with selected markers
Genes_to_plot
Group_to_plot
Colors_To_Plot
Create heatmap wth selected list of genes
Enter search terms, separated by commas
Create Featureplots for list of genes
genes_to_plot
Create tsne of sub-clustered data
Cluster_to_subcluster
PCS_to_subcluster
Resolution_to_subcluster
Go
Download Recluster RDS
Create subsets of the seurat object
Create subset by:
ident.use
GeneExpression
cells.use
ident.remove
accept.low
Cluster Identity
Name of gene
List of Cell names
Cluster Identity to Remove
Minimum Expression of gene
Download Subset RDS file
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